To use this software, type:
java -jar rsprApprox.jar treefile.nexus logfile.log
treefile.nexus is a nexus file of trees, of
which the first two trees in the file will be compared (if there's
more than 2, the extras will be ignored) and
is where log and debug messages are written. When run, the program
will write the rSPR approximation to the screen.
The perl scripts are:
*.jar) that can also be called directly:
Each one takes the size of the forest (r), and the names of the files that contain the trees.
java -jar treeSatHyb 3 s10_t1.nexus s10_t2.nexus
There's also the source code (
/src) and lots of example
*.nexus) for testing.